AVERT-IT

Project Progress Report – Month 18

October 10, 2009 · Leave a Comment

Objectives

The primary objective of our research is providing clinicians with advanced notice of upcoming hypotensive episodes.

In order to achieve this result we’re needing to solve a number of issues:

* Agree a common definition of hypotensive episode – all six of our centres currently work to different definitions
* Build a software interface which collects data from patient monitoring devices – all centres have different equipment
* Find a way of transmitting patient data from the research centres to our data warehouse
* Build software which collects observation, treatment and outcome data at the bedside
* Build a Bayesian Artificial Neural Network and train it to recognise patterns which precede hypotensive episodes
* Build software to enable researchers to analyse actual data, identifying circumstances in which the BANN achieves an accurate prediction and those in which if provides false positives
* Build software which alerts clinicians to potential upcoming episodes.
* Multi stage clinical trial.

In parallel the project includes the need for multi stage ethics approval, support from IT staff in each of the centres, identification and protection of foreground IPR, and multiple routes to market.

We’re also required to promote Framework 7 research and collaborate with other FP7 projects as appropriate.

Results

The starting point for our research has been a database of patient care data amassed as part of the Brain IT project, previously funded under Frameworks 4 and 5. This data is minute by minute readings from monitors, and comprises more than 200 patients with traumatic brain injuries. In some cases the data is incomplete and possibly inaccurate.

In the first stage we analysed the legacy data testing the various definitions of hypotension used by the research centres. Comparison of the definitions and events indicated by them enabled us to agree between all six centres a common definition, on which we could train the BANN.

In the second stage the BANN was used to examine patterns of parameters preceding episodes. Subsequent monitoring of those patterns suggested approximately 35% of future episodes could be identified as outputs from the pattern recognition. In addition some false positive predictions indicated ways the monitored parameters and definitions could be refined to improve accuracy.

In the third stage, working with IT staff at the centres data capture and transmission software has been built and installed. Software for collecting data at the bedside has been built in conjunction with clinical staff and installed. Software enabling researchers to monitor and enhance the accuracy of the prediction engine has been installed and is now in production use.

in the fourth stage we’ll be monitoring and enhancing the BANN prediction capabilities, preparing data which will support our application for ethics approval for stage five – live monitoring and alerting of upcoming episodes.

Throughout the project we’ve been researching questions related to the protection of IPR in the worlds major markets. As of yet we’ve made no application for patent – because we haven’t finished the research. We’re still refining our understanding of monitored parameters and which patterns offer which levels of accurate prediction.

We’ve also collaborated with multiple public bodies, promoting FP7 and offering guidance to potential applicants.

The Avert-IT project has been selected by the Use and Diffuse project as an example of best practice and features in the projects publications.

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Year 2 Project Review – Vilnius September 2009

September 22, 2009 · Leave a Comment

Over the weekend we had a chance to get the whole team together and review our progress.

Vilnius isn’t the easiest place to get to, for most of us at least, which helps us understand how difficult it can be for Arminas to join us in other parts of Europe.

But the real benefit of his hosting the meeting was we all got to experience Vilnius, a really interesting city in glorious autumn sunshine.

Rightly, the tourism was a side show to the main event – our project review.

The old town is steeped in history, full of character and a lot of fun. Lithuanian cuisine offers an exciting blend of gourmet and country cooking and there are dozens of quality restaurants where it can be enjoyed.

We aren’t ready to announce results to the world at large yet, but can confirm we’re heading in the right direction. We already have minute by minute parameter data collecting from multiple, international, sites and we are predicting upcoming hypotensive events.

Quite how we’re doing this is, for the moment, understood only by some very special people. Bayesian Artificial Neural Network technology is designed to find out stuff the human brain can’t cope with and in our case it is.

The project is still a year away from sharing its results, during which time some other very special people, will be managing the clinical trial.

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Use and Diffuse Quotes Avert-IT as Best Practice

September 3, 2009 · Leave a Comment

The Use and Diffuse Project is funded by the EU under the FP7 research grant programme. The project will shortly publish its report, guiding Universities and SMEs on how to apply for, manage and exploit EU grants for research.

The report quotes four projects and profiles them as case studies of best practice in order that others may be better equipped to take advantage of EU support.

Happily Avert-IT is one of the four case studies. Here’s the foreword from the draft report, soon to be published.

Foreword
This Guide is intended to provide Small and Medium Sized Enterprises (SMEs), as well as Universities, Institutes and other Research Technology Development organisations (RTDs) with practical, useful and easy to follow advice on how to maximize the impact of Research and Development projects involving SMEs by ensuring that the results are effectively used and disseminated.

The Guide has been produced as part of Coordination and Support Activities being carried in the “USEandDIFFUSE” Project (Support of dissemination and exploitation of results obtained in research projects realized with the participation of the SME sector), that is funded under the European Commission’s 7th Framework Programme (FP7), and more specifically under “Research for the Benefit of SMEs”.

Input for the manual has been based on 2008 research conducted on Research and Development projects carried out in Health and ICT sectors. Although it has not been explicitly validated, it is likely that these findings are equally applicable for other sectors too. Neither the authors nor any person acting on their behalf may be held responsible for the use that may be made of the information contained therein.

The USEandDIFFUSE project…

aims to support the dissemination and exploitation of results of research projects involving SMEs, based on an analysis of current practices in the use of RTD results in projects involving SMEs in order to draw upon best practice and guidelines that can be carried forward and disseminated to benefit existing and future R+D efforts involving industry.

In addition to this Guide, the project website http://www.useanddiffuse.eu offers a good source of information about using and disseminating RTD results and also provides the contact details of the Project Coordinator and the consortium of partners.

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International Conference on Exploiting Existing Data for Health Research

July 20, 2009 · Leave a Comment

Richard Sinnott will be presenting a paper entitled “e-Infrastructure Supporting Secure, Process-oriented Clinical Data Linkage” to the International Conference on Exploiting Existing Data for Health Research
which will be held at St Andrews, Scotland, September 2009.

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